PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G03900.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 228aa    MW: 25277.2 Da    PI: 6.7972
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G03900.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-132064147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rW++eE+ ++++a   +G + Wk+I + +  ++t+ q++s+ qk+
  LPERR05G03900.2 20 RERWSEEEHARFLHALMIFGRD-WKRIEAFVA-TKTAIQIRSHAQKH 64
                     78******************77.*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-161470IPR009057Homeodomain-like
PROSITE profilePS5129416.5581569IPR017930Myb domain
TIGRFAMsTIGR015572.1E-151967IPR006447Myb domain, plants
SMARTSM007173.3E-101967IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-72064IPR009057Homeodomain-like
PfamPF002497.8E-112064IPR001005SANT/Myb domain
CDDcd001672.18E-82265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVAMAGKKKQ RKPYTITRPR ERWSEEEHAR FLHALMIFGR DWKRIEAFVA TKTAIQIRSH  60
AQKHFLKARK FGLAGVMPPP LHPRRAADAL AAEMMPPWLP SAVAPPPPSA VQQSMTDWMP  120
ASYSPEAASF LPLIHSSECS FVEAPNCSGS GEAWITSDDA FLQDESILIP ISPDDLGFSE  180
VYKFVGDVFG SGEPRPVEAL LWRLQGMDPA ISETILLVLK NLEANLVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638954.11e-116PREDICTED: protein REVEILLE 8
TrEMBLA0A0D9WD551e-168A0A0D9WD55_9ORYZ; Uncharacterized protein
STRINGBGIOSGA018757-PA1e-115(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.12e-39MYB_related family protein